Projects

.structural-biology

ELASPIC

Ensemble Learning Approach for Stability Prediction of Interface and Core mutations.

PAGNN

Protein adjacency graph neural network.

datapkg

A collection of pipelines for processing and transforming data and training machine learning models.

kmbio

Fork of biopython’s Bio.PDB, with special powers.

kmtools

Bits of tested and reusable code for structural biology.

ostrokach-forge

A collection of conda recipes .

tkpod

Toolkit for Protein Optimization and Design.

Teaching

I have been a teaching assistant for the following courses:

Course Code Course Title N. terms
CSC411H Introduction to Machine Learning 1 term
CSC384H Introduction to Artificial Intelligence 1 term
CSC343H Introduction to Databases 1 term
CSC148H Introduction to Computer Science 6 terms
CSC128H Content Developer for PythonTA 1 term
CSC120H Computer Science for the Sciences 1 term
CSC108H Introduction to Computer Programming 2 term
C4M Computing for Medicine Workshops 1 term
CS Help Center TA 1 term
PHM140H Molecular Pharmacology 2 terms
PHM225H Introduction to Biochemistry and Molecular Biology 1 term

Recent Posts

Steps to increase the MySQL open-files-limit.

Instructions on how to migrate from MariaDB 10.1 to MySQL 5.6.

Setting up a production webserver on Ubuntu 14.04 with Apache httpd, Anaconda Python, and Django.

Downgrading from NFSv4 to NFSv3 in order to gain ACL support.

Contact

  • @ostrokach on Keybase.
  • Donnelly Centre, University of Toronto, Ontario, Canada